Stein Laboratory

This is a Web site run by Lincoln Stein at Cold Spring Harbor Laboratory in Cold Spring Harbor, NY. My laboratory develops software for computational biology and genome bioinformatics. Main areas of current research are pointed to by the navigation bar above.

You may wish to visit Lincoln Stein's personal home pages, which contains software and resources that might be of interest to general readers.

Bioinformatics Databases and Other Resources

• Reactome, a database of biological pathways
• Generic genome browser
• Gramene database of comparative grain genomics
• Wormbase, the database of C. elegans
• The Human HapMap Database
• The Generic Model Organism Database Project
• Reverse Genetics in Maize
• Distributed Sequence Annotation System
• Arabidopsis Insertion Tagging Database
• CSHL Intensive Course in Genome Informatics

AcePerl and AceBrowser

AcePerl and AceBrowser are interfaces to the ACEDB database. They provide the first scriptable access to a community biological database.

• Read more about AcePerl.
• Read more about AceBrowser.
• Lists of public-access ACEDB databases

BoulderIO

BoulderIO is a flexible scheme for describing and manipulating a wide range of biological and non-biological data types. It is available as Perl and Java APIs (the latter courtesy Nat Goodman's lab at Jackson Laboratories):

• BoulderIO in Perl
• BoulderIO in Java (gzipped tar archive)

Contact Information

The mailing address for the lab is:

Last modified: Fri Aug 23 13:00:32 EDT 2002